PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.283920.1
Common NameCsa_5G608330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 372aa    MW: 41064.1 Da    PI: 6.1564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.283920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.9e-15178224354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L +++e++k+L
  Cucsa.283920.1 178 KSHSEAERRRRERINNHLAKLRSILPST-----TKTDKASLLAEVIEHVKEL 224
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.698175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14179231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14179233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.38E-5188227No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-4274325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGEDQEEDH QQQQHQGECS QTIENMFQEQ LLLHQQQLQN NDGDHNNNDH HMMYGVEHHH  60
HGIGRSGLIF PPEVMPPMLQ PWSSLNPFMI PPPPPPPLPT SLSCSSSSYG SLFNRRPPNC  120
LQFAYDGPSS ADHLGRIIST TLGPVVHPGS TAPFGLQAEL GKMSAQEIMD AKALAASKSH  180
SEAERRRRER INNHLAKLRS ILPSTTKTDK ASLLAEVIEH VKELKRQTSI IAETSPIPTE  240
VDEVSVDDAS EQEMMMISNN GSISSSAKFV IKASLCCEDR SDLLPDLIKT LKSLRLTTLK  300
AEITTLGGRL RNVLFVTADE EQQQQHNITS IIQDALKAVI EKTAGDHDSS SANIKRQRTT  360
TTNNINNNNI L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135410.20.0PREDICTED: transcription factor bHLH30, partial
SwissprotQ9S7Y11e-96BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0A0KR140.0A0A0A0KR14_CUCSA; Uncharacterized protein
STRINGVIT_01s0011g02940.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-75bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]